Group theory and infra-red spectroscopy

Group theory allows us to determine the symmetries of a molecule, enabling an efficient way to obtain relevant information in infra-red (IR) spectroscopy.

The objective in this article is to use group theory to work out the symmetries of the normal modes of a molecule and then ascertain whether they are IR-active. As an example, let’s consider , which belongs to the point group. Here’s the corresponding character table:

Instead of using Cartesian displacement vectors to form a basis for generating representations of the point group, as we did in the previous article, we shall use mass-weighted Cartesian coordinate unit vectors to form a basis (see diagram above). Since a symmetry operation of transforms into an indistinguishable copy of itself, it transforms each of the elements of the basis set into a linear combination of elements of the set (see eq55 to eq61). Therefore, centred on every atom of generate a representation of the point group. To find the matrices of the representation, we arrange the vectors into a row vector and apply the symmetry operations of the point group on it to obtain the transformed vector. The matrices of the representation are then constructed by inspection. For example,

The traces of the matrices are

Using eq27a and the character table of the point group, we have

which implies that the decomposition of the reducible representation is .

Applying the projection operator on each element of the basis set for all irreducible representations, we have

Each equation in the above table is a basis of the irreducible representation it belongs to. Since any linear combination of bases that transform according to a one-dimensional irreducible representation is also a basis of that irreducible representation, we can generate symmetry-adapted linear combinations (SALC) from the above basis vectors that belong to their respective irreducible representations.

We have shown in an earlier article that

    1. the number of orthogonal or orthonormal basis functions of a representation corresponds to the dimension of the representation.
    2. if is a basis of a representation of a group, then any linear combination of is a basis of a representation that is equivalent to .

This implies that we can always select a set of nine orthonormal SALC for a block diagonal representation that is equivalent to . Since none of the nine SALCs can be expressed as a linear combination of the others, each SALC, known as normal coordinates , must describe one of nine independent motions of the molecule.

A quick method to assign the irreducible representations from the decomposition of  to the nine degrees of freedom of is to refer to the character table, where the basis functions ,  and represent the three independent translational motion and , and  represent the three independent rotational motion. Deducting the irreducible representations associated with these six basis functions from the direct sum of , we are left with , and . These remaining three irreducible representations correspond to the vibrational degrees of freedom.

 

Question

Does the basis function in the character table of the point group correspond to the normal coordinate for ?

Answer

Yes. In fact, there is a correspondence between the basis functions and six of the normal coordinates of . The three normal coordinates describing the vibrational motions of are known as normal modes.

 

To verify whether the three normal modes are IR-active, we refer to the Schrodinger equation for vibration motion (see eq93):

where the separation of variables technique allows us to approximate the total vibrational wavefunction as and hence, .

Each describes a normal mode of the molecule and has the formula (see eq94):

where is the normalisation constant for the Hermite polynomials .

The total vibrational energy (see eq96) is

A vibrational state of a polyatomic molecule is characterised by quantum numbers. Hence, the vibrational ground state of , where , is or

Many IR-spectroscopy experiments are conducted at room temperature, where most molecules are in their vibrational ground state. According to the time-dependent perturbation theory, the transition probability between orthogonal vibrational states within a given electronic state of a molecule is proportional to

where and are the initial and final states respectively and is the operator for the molecule’s electric dipole moment.

In other words, no transition between states occurs when . Since the objective is to ascertain the IR activity of each of the three normal modes of , it is suffice to study the fundamental transitions, where and or or .

The next step involves determining which irreducible representation of the point group , , , and belong to. Since the components , and  represent the electric dipole moment along the , and  directions respectively, they transform in the same way as the basis functions , and  respectively (see character table above).

 

Question

Show that , where represents the symmetry operations of a point group and .

Answer

In general, if , then the function is invariant under the symmetry operation . Every value of is mapped into by and we can say that if . The converse is also true, i.e. if the variable of the function  transforms according to , then . From this article, the potential term of the vibrational Hamiltonian for is . Since the function is invariant under any symmetry operation, or simply

If each is distinct, then or

If is degenerate, eq55 states that and eq105 becomes

where we have assumed that and are degenerate.

As described in this article, forms a set of orthonormal eigenvectors of the vibrational Hamiltonian. So, and are orthonormal vectors. The matrix formed by using these vectors as its columns is an orthogonal matrix , which is defined as . This is because the dot product of different columns will be zero, and the dot product of a column with itself will be 1. Since if is an orthogonal matrix (see property 11 of this link for proof),  or

which implies that and .

The first two terms on LHS of eq107 then becomes . This implies that must also be equal to in eq105 if is degenerate. Therefore, regardless of whether is non-degenerate or degenerate.

 

As mentioned in the above Q&A, if the variable of the function  transforms according to , then . It follows that if the variable of the function transforms according to , then , in which case is the reflection operator about the vertical axis of the graph of against . Therefore, the ground state vibrational wave function of transforms according to the totally symmetric irreducible representation of the point group because

Next, let’s analyse the symmetries of , and . These three wave functions (see this article) have the same form of:

Eq108 is a product of two functions and . Since is totally symmetric, the theory of direct product representation states that must transform according to the irreducible representation of the point group that belongs to.

With reference to the character table above, the theory of direct product representation again finds that the functions , and in eq104 transform according to the irreducible representations of , and respectively. Therefore, the theory of vanishing integrals states that

Zero Not zero
Zero Zero
Not zero Zero

Since in eq104 for each of the three normal modes, all three normal modes of are IR-active.

 

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Vector subspace and eigenspace

A vector subspace is a subset of a vector space, and it is a vector space by itself.

More formally, the vector subspace  of the vector space satisfies the following conditions:

1) Commutative and associative addition for all elements of the closed set.

\boldsymbol{\mathit{v_{1}}}+\boldsymbol{\mathit{v_{2}}}=\boldsymbol{\mathit{v_{2}}}+\boldsymbol{\mathit{v_{1}}}

(\boldsymbol{\mathit{v_{1}}}+\boldsymbol{\mathit{v_{2}}})+\boldsymbol{\mathit{v_{3}}}=\boldsymbol{\mathit{v_{1}}}+(\boldsymbol{\mathit{v_{2}}}+\boldsymbol{\mathit{v_{3}}})

2) Associativity and distributivity of scalar multiplication for all elements of the closed set

c_1(c_2\boldsymbol{\mathit{v_{1}}})=(c_1c_2)\boldsymbol{\mathit{v_{1}}}

c_1(\boldsymbol{\mathit{v_{1}}}+\boldsymbol{\mathit{v_{2}}})=c_1\boldsymbol{\mathit{v_{1}}}+c_1\boldsymbol{\mathit{v_{2}}}

(c_1+c_2)\boldsymbol{\mathit{v_{1}}}=c_1\boldsymbol{\mathit{v_{1}}}+c_2\boldsymbol{\mathit{v_{1}}}

where c_1 and c_2 are scalars.

3) Scalar multiplication identity.

\boldsymbol{\mathit{1}}\boldsymbol{\mathit{v_{1}}}=\boldsymbol{\mathit{v_{1}}}

4) Additive inverse.

\boldsymbol{\mathit{v_{1}}}+(-\boldsymbol{\mathit{v_{1}}})=0

5) Existence of null vector , such that

\boldsymbol{\mathit{0}}+\boldsymbol{\mathit{v_{1}}}=\boldsymbol{\mathit{v_{1}}}

6) Closed under addition: the sum of any two or more vectors in is another vector in .

7) Closed under scalar multiplication: the product of any vector in with a scalar is another vector in .

For example, in the  space, a plane through the origin is a subspace, as is a line through the origin. Hence, and are subspaces of . The entire space and the single point at the origin are also subspaces of the space. This implies that a subspace contains a set of orthonormal basis vectors.

An eigenspace is the set of all eigenvectors associated with a particular eigenvalue. In other words, it is a vector subspace formed by eigenvectors corresponding to the same eigenvalue. Consider the eigenvalue equation , where . If the eigenvalues of ,  and are , and respectively, then  and are the eigenspaces of the operator . Since an eigenspace is a vector subspace, it must contain a set of orthonormal basis vectors.

 

Question

Show that all orthonormal basis eigenvectors in an eigenspace are linearly independent of one another.

Answer

A set of eigenvectors is linearly independent if the only solution to eq1 is when for all . Taking the dot product of eq1 with gives

which reduces to because . Since is arbitrary, we conclude that and that the set is linearly independent.

 

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Reduction of the two-particle problem to one-particle problems

The reduction of a two-particle problem to one-particle problems simplifies the Schrodinger equation by separating it into two one-particle equations. This process involves treating the two particles as if they were a single effective particle, utilising the concepts of center of mass and reduced mass .

With reference to the above diagram, we define the relative coordinates of the system as

The coordinates of the center of mass of the two particles of masses and  are

 

Question

How is centre of mass of the diatomic molecule derived?

Answer

The centre of mass can be derived via the principle of moments. For example, , which rearranges to .

 

Substitute eq302 in eq303, we have

The magnitudes of the linear momentum vector of the particles with mass and are

Substituting eq303a in eq304 and eq305 and summing the results, we have

where and .

 

Question

Explain in detail the concept of reduced mass.

Answer

The reduced mass of two particles is a quantity that simplifies the description of the two-body problem, making it equivalent to a one-body problem, which consists of a fictitious particle of mass . Such a problem, e.g. one in the field of molecular vibrations, is easier to solve.

 

Eq306, which represents the total kinetic energy  of the two particles, can be rewritten as

is expressed in center-of-mass coordinates and  is the total mass of the system. Therefore, is the kinetic energy of the translational motion of the system, and consequently, must describe the kinetic energy of the rotational motion and vibrational motion (collectively known as internal motion) of the system.

If the potential energy of the system is a function of the relative coordinates of the two particles, the Schrodinger equation is

Since translational motion is independent from rotational and vibrational motions, , where and  are the translational energy of the system and the internal motion energy of the system respectively. This implies that . Noting that translational energy is purely kinetic, we can separate eq307 into two one-particle problems:

Eq308 is a Schrodinger equation of a fictitious particle of mass that is subject to a zero-potential field, while eq309 is a Schrodinger equation of another fictitious particle of mass that is under the influence of the potential . Instead of relative cartesian coordinates , the two equations can also be expressed in spherical coordinates of one particle relative to the other (see diagram below):

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Central force problem

The central force problem involves solving the Schrodinger equation for a particle moving under the influence of a central potential, which is a spherically symmetric function.

The Hamiltonian of a particle subject to a central force is

where (see this article for derivation) and  is a function of only since it is a spherically symmetric function.

Substituting eq49 and eq50 in eq300 gives

The eigenfunctions of , which is the operator for the square of the magnitude of the orbital angular momentum of the particle, are the spherical harmonics , which are independent of (for molecules, we use and instead of the quantum numbers and ). Therefore, the Hamiltonian is separable and the solution to the Schrodinger equation is of the form

In conclusion, the Schrodinger equation of a particle subject to a central force separates into radial and angular parts. This is possible because of the spherically symmetric potential. The eigenfunction is the product of two functions, each independent of the other’s coordinates. The central force problem arises when solving the Schrodinger equations for the hydrogen atom and the nuclear motion of a diatomic molecule.

 

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Determining the degrees of freedom of a molecule using group theory

Group theory allows us to determine the symmetries of the degrees of freedom of a molecule in a simple way, especially the vibrational modes of the molecule.

Consider , which belongs to the  point group with the following character table:

Let’s form a set of basis with 9 unit displacement vectors representing instantaneous motions of the atoms (see diagram above). Since a symmetry operation of  transforms  into an indistinguishable copy of itself, it transforms each of the elements of the basis set into a linear combination of elements of the set. Therefore, orthogonal unit vectors centred on every atom of  generate a representation of the  point group. To find the matrices of the representation, we arrange the unit vectors into a row vector and apply the symmetry operations of the  point group on it to obtain the transformed vector. The matrices of the representation are then constructed by inspection. For example,

The traces of the matrices are

Using eq27a and the character table of the point group, we have

which implies that the decomposition of the reducible representation is .

A quick method to assign the irreducible representations from the decomposition of  to the nine degrees of freedom of is to refer to the character table, where the basis functions ,  and represent the three independent translational motion, and , and  represent the three independent rotational motion. Deducting the irreducible representations associated with these six basis functions from the direct sum of , we are left with , and . These remaining three irreducible representations correspond to the vibrational degrees of freedom.

To understand how the quick method works, we apply the projection operator on each element of the basis set for all irreducible representations to give

Each equation in the above table is a basis of the irreducible representation it belongs to. Since any linear combination of bases that transform according to a one-dimensional irreducible representation is also a basis of that irreducible representation, we can generate symmetry-adapted linear combinations (SALC) from the above basis vectors that belong to their respective irreducible representations, e.g. belongs to .

 

Question

Show that  is a basis of  and that it describes the translational motion of  in the -direction.

Answer

Let be the -th symmetry operation of the  point group. With reference to the subspace of , we have and because  and are bases of .

 and  are also bases of , as and .

In an earlier article, we explained that the displacement of in the -direction is described in terms of unit instantaneous displacements vectors that are centred on the atoms, or equivalently, a single instantaneous displacement vector on the centre of mass. Using the second description, we then showed that the translational motion of  in the -direction transforms according to . Since the two descriptions are equivalent (see diagram below), the three -bases in the first description must transform according to the subspace of . This is only possible if they are expressed as the SALC .

Consequently, the SALCs describing the three translational degrees of freedom are:

SALC Description
Translation in the -direction
Translation in the -direction
Translation in the -direction

 

Using the logic mentioned the above Q&A, the rotational motion are given by:

SALC Description
Rotation around the centre of mass with reference to the -axis
Rotation around the centre of mass with reference to the -axis
Rotation around the centre of mass with reference to the -axis

where are positive coefficients and each displacement vector is tangent to the relevant circular path (see diagram below).

Why do the remaining three irreducible representations of , and correspond to vibrational degrees of freedom? We have proven, in an earlier article, that if the basis vectors transform according to a reducible representation of the  point group, then any linear combination (SALC) of the vectors is also a basis of a reducible representation that is equivalent to . We have also shown, in the same article, that the number of linearly independent basis functions of a representation corresponds to the dimension of the representation. Hence, we need to select nine linearly independent SALCs consisting of six SALCs listed in the two tables above and three remaining SALCs, each of which belonging to , and respectively. Since none of the nine SALCs can be expressed as a linear combination of the others, the remaining three SALCs must describe the independent vibrational degrees of freedom of . The possible vibrational modes, noting that two are totally-symmetric () and one is antisymmetric () with respect to rotation about the principal axis, are

The SALCs corresponding to these modes have the form:

SALC Description
Vibration: symmetric stretching
Vibration: bending
Vibration: antisymmetric stretching

where are positive coefficients.

To determine the coefficients, we note that orthogonal vectors are linearly independent. If we let  and solve for , a possible set of orthogonal SALC vectors are:

SALC

which can further be normalised to give orthonormal SALC vectors.

The method that we have used so far does not take into account the absolute masses of the atoms, only that mass of  is different from mass of . Furthermore, the restriction of motion due to the presence and stiffness of chemical bonds is also not considered. Therefore, the centre of mass does not correspond to the actual centre of mass of the water molecule. It is along the -axis but not beyond a line joining the centres of the hydrogen atoms. The exact position of the centre of mass of the water molecule affects the values of the coefficients of the SALC vectors, but is inconsequential when the objective is determine which irreducible representation a particular degree of freedom belongs to.

 

Question

Determine the symmetries of the vibrational modes of .

Answer

There are a total of 12 degrees of freedom. Using a basis set of 3 orthogonal displacement vectors on each atom, we have

which decomposes to .

Deducting the irreducible representations in the character table for translational and rotational motion, the symmetries of the 6 vibrational modes of  are , ,  and .

 

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Degrees of freedom

The degrees of freedom of a chemical species are the number of independent displacements of the species.

An atom has three degrees of freedom because its instantaneous displacement is defined by three orthogonal directions in the  space. A molecule of atoms is characterised by degrees of freedom, as every atom can be displaced from its equilibrium position in three orthogonal directions. Each of the motion is independent and cannot be expressed as a combination of the others. However, the presence of chemical bonds restrict some of these displacements, resulting in three groups of independent motion: translation, rotation and vibration.

To understand how the restriction of molecular motion by chemical bonds results in three groups of motion, each of which is independent of the others, we consider a diatomic molecule (see diagram above), where the red, purple and brown arrows represent instantaneous displacements of the atoms.

Firstly, we would expect the molecule to have six degrees of freedom since . Next, the motion of the two atoms (red arrows) in the same direction and with the same magnitude, which is equivalent to the motion of the centre of mass of the molecule in the positive -direction, is a translational motion. Similarly, the centre of mass of the molecule can move independently in the -direction and -direction, resulting in another two degrees of translational freedom.

The rotational motion of the molecule around the -axis passing through its centre of mass is described by the two brown arrows that are tangent to the circle of motion. The rotation about the -axis contributes to another degree of freedom. However, the molecule spinning around the -axis is not considered a degree of freedom, as no atomic displacement has occurred. In fact, all linear molecules have two degrees of rotational freedom. One common property of translational motion and rotational motion is that they are both rigid transformations, meaning that the bond length doesn’t change throughout either motion.

When the atoms are displaced in opposite directions (purple arrows), they oscillate about their equilibrium positions because they are restricted by the chemical bond. This is known as vibrational motion.

Combining two degrees of rotational freedom with three degrees of translational freedom, all linear molecules have degrees of vibrational freedom. Since the centre of mass moves during translation, while the position of the centre of mass of a molecule does not change during rotational motion and vibrational motion, translational motion is independent of rotational motion and vibrational motion. Furthermore, rotational motion is independent of vibrational motion because rotational motion is a rigid transformation, whereas vibrational motion is not. In general, the three types of motion are independent of one another and all possible motion of atoms of a molecule are a combination of them.

 

Question

What if the brown arrows represent linear motions, instead of tangents to the circle of motion?

Answer

If that’s the case, the atoms move linearly in the directions of the arrows until they are restricted by the chemical bond. Such a motion is a combination of vibrational and rotational motions and not an independent motion. Therefore, it is not a degree of freedom.

 

Since an arrow on an atom can be expressed as a linear combination of three orthogonal vectors centred on the atom, the degrees of freedom of a molecule with  atoms are often expressed in terms of  orthogonal unit displacement vectors.

For example, when the motion of the water molecule in the above diagram is described only by the three -unit vectors, and the magnitudes of the displacement of all atoms are equal, the molecule is translating in the -direction. Similarly, if the only unit vectors describing the molecule’s motion are  and , and the atoms have equal displacement magnitude, the molecule is rotating around the -axis. We will show, in the next article, that the translational motion of  in the -direction and the rotational motion of around the -axis can be expressed as the symmetry-adapted linear combinations  and  respectively.

 and  can also describe a twisting motion of the molecule (like a gym glider machine). However, such a motion, as explained in the Q&A above, is not a degree of freedom of the molecule. Unlike a linear molecule, a non-linear molecule has three rotational degrees of freedom, and hence,  degrees of vibrational freedom. Group theory allows us to determine which irreducible representation of a point group a particular degree of freedom belongs to, and consequently provides a simple way to predict spectroscopic properties the molecule.

 

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Set and subset

A set is collection of different mathematical objects called elements, which can be numbers, people, colours, matrices, etc. Examples of sets are {4, 20, 83, 1059, …} and {red, blue, cyan, grey}, where the former is an infinite set and the latter is a finite set. Two sets  and are equal if they have the same elements, e.g. and . A set with no element, denoted by , is called an empty set. An element in a set is denoted by .

A subset is an equal or smaller collection of elements of a particular set. With reference to the above diagram, the set is a subset of the set , which is mathematically denoted by . Similarly,  and .

Question

Is  a set.

Answer

No, because a set is defined as a collection of different elements.

 

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Group theory (overview)

Group theory is the study of mathematical structures called groups, which have properties that are used to classify molecules by symmetry.

The classification of a molecule according to its symmetry in turn allows us to analyse its molecular properties. In the field of quantum chemistry, group theory simplifies calculations, e.g. in determining if overlap integrals are zero and investigating the degree of degeneracy of a system. Group theory is also useful in predicting spectroscopic transitions, especially in electronic and vibrational transitions.

To fully understand the theory, we need to have some knowledge of abstract algebra and apply it to derive the great orthogonality theorem.

 

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Binary operation

A binary operation is a rule that combines two elements to form another element.

The most basic binary operations are the addition and multiplication of numbers in a set. For example, for  is a binary operation. In general, a binary operation is denoted by , where and are the operands and is the chosen binary operation.

 

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Group

A group is a set, together with a chosen binary operation, that satisfies the properties of closure, identity, inverse and associativity as follows:

    1. Closure: if and  are elements of the group , then  is also an element of .
    2. Identity: there exists an element called the identity, which is denoted by , such that for .
    3. Inverse: every element in  has an inverse , which is itself an element of , such that .
    4. Associativity: for all .

Consider the set  under the binary operation of addition mod 4. It is a group because it satisfies the four properties mentioned above. For example, the element 0 is the identity, since , where . As for inverses, , because gives the identity. Similarly, ,  and . The closure and associativity properties can be easily verified.

Question

What is addition mod 4 for the set ?

Answer

It means that if the sum of two elements of the set is greater than 3, then we divide the result by 4 (called the modulus) and take the remainder as the answer. For example, ,  and .

 

Similarly, the set  under the binary operation of multiplication mod 8 is a group. In this case, if the product of two elements of  is greater than 7, we divide the result by 8 and take the remainder as the answer. All possible binary operations and answers can be presented in the form of a multiplication table as follows:

where the left operand and right operand of the binary operation are listed in the top row and the leftmost column respectively.

Clearly, the multiplication of integers is associative. From the multiplication table, we can validate the closure property of , authenticate that 1 is the identity element and determine that the inverse of an element is the element itself. The associativity property is also easily verified separately.

Question

Is the set under the binary operation of multiplication a group?

Answer

Yes, it is a trivial group with only one element.

 

If the results of all binary operations of a group are independent of the order of the operands (i.e., ), the group is said to be Abelian. Both groups  and  mentioned above are examples of Abelian groups.

The order of a group , denoted by , is the number of elements in . For example,  for both  and . The order of an element  of a group  under the binary operation of multiplication, denoted by , is the smallest value of  such that . For example, the order of the all elements in the group  is 2.

Finally, some useful properties of a group can be inferred from the main properties of closure, identity, inverses and associativity. Two such inferred properties are:

  1. Cancellation

(Statement) If , then  for all  in the group . In other words,  is “cancellable”.

According to the inverses property of a group, if , there exists a unique , where . The proof for the cancellation theorem then involves left-multiplying  by  and using the associativity and identity properties:

Question

Proof the uniqueness of inverses in a group, i.e. for each , there is a unique element such that .

Answer

Suppose has two inverses and . Then or . By cancellation, .

 

  1. Rearrangement theorem

(Statement) Let and . Suppose we multiply each element of  by to form a new group , where . Then, contains each element of once and only once. In other words, .

This theorem is proven by contradiction. Suppose two elements of are equal, where . By cancellation, we have , which contradicts the definition that a group is a set, which is a collection of different elements. However, if , the order of elements in  may not be the same as that in , and thus the term ‘rearrangement’.

 

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